Unable to start AMARES as normal user

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  • 2016-12-01 at 14:37 #1796
    Markus Sack
    Participant

    Hi,

    I am not able to start AMARES as a “normal” user on our Ubuntu 14.04 machine.
    I get the error:
    clicked on 999999mrui.quantitation.amares.view.Amares
    Exception in thread “AWT-EventQueue-0” java.lang.UnsatisfiedLinkError: Expecting an absolute path of the library: ?/.eMrui/native/libamaresQuantitation.so

    It seems that jMRUI has problems to identify the correct username and/or path. Because as “root” I do not have any problems and this questionmark in the path becomes a ‘/root/.eMrui..’.

    Anyone has a solution or maybe a workaround?
    Thanks in advance

    Greets
    Markus

    Markus Sack
    Central Institute of Mental Health

    2016-12-01 at 14:47 #1797
    Michal Jablonski
    Blocked

    Dear Markus,

    Probably some libraries are missing. Probably it’s libg2c0.

    On ubuntu I recommend this:

    Add the following lines to /etc/apt/sources.list

    deb http://snapshot.debian.org/archive/debian/20070730T000000Z/ lenny main
    deb-src http://snapshot.debian.org/archive/debian/20070730T000000Z/ lenny main
    deb http://snapshot.debian.org/archive/debian-security/20070730T000000Z/ lenny/updates main
    deb-src http://snapshot.debian.org/archive/debian-security/20070730T000000Z/ lenny/updates main

    and install by sudo apt-get install libg2c0_3.4…….

    Tell me if it helped.

    MJ

    2016-12-01 at 15:38 #1800
    Markus Sack
    Participant

    Dear Michal,

    I installed libg2c0 in version 3.4 but without any change.
    I can open files.. change things and so on.. but as soon as I try to open AMARES or anything else which you can find in the ‘.eMrui/natives’ folder I get this error message.
    Maybe it helps: Same for jMRUI4 but NOT for version 3. In v3 everything works.

    Any other idea maybe?

    Markus Sack
    Central Institute of Mental Health

    2016-12-01 at 16:08 #1801
    Michal Jablonski
    Blocked

    Do you have 32bit Java?
    Which jMRUI version are you running?

    2016-12-01 at 16:16 #1802
    Markus Sack
    Participant

    Yes.. I’m using a 32bit java, JDK.
    JAVA_HOME=/usr/local/java32/jdk1.8.0_60
    JRE_HOME=/usr/local/java32/jdk1.8.0_60/jre

    I tried every jMRUI version from 3 to now 5.2 (so.. 3/4/5.2).
    We’re using jMRUI for quite a long time now. But since we changed our system to Ubuntu14.04 only jMRUI version 3 works properly.

    And as I said: What I don’t understand is that if I start jMRUI5 as root everything works.

    Thanks for your help.

    M

    Markus Sack
    Central Institute of Mental Health

    2016-12-01 at 16:33 #1803
    Markus Sack
    Participant

    Hi,

    it seems to work in general..
    I created a new local user on our system and with this account I can start AMARES.
    So I guess I have to first talk to our IT department where the main difference between my and this account is.

    Thanks alot.

    Markus Sack
    Central Institute of Mental Health

    2016-12-01 at 17:14 #1804
    Michal Jablonski
    Blocked

    đŸ™‚

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