Course on Simulating Metabolite MR Signals in NMRScopeB (jMRUI)

Events

Free of charge; 25.11.2024, 2pm – 6:15 pm CET; online

For more information and REGISTRATION visit the Magnetic Resonance Core Facility, Institute of Scientific Instruments of the Czech Academy of Sciences web page

This course will offer in-depth training on simulating metabolite signals using the NMRScopeB spin system simulator, part of the jMRUI software package, and assembling metabolite basis set for metabolite concentration estimation in jMRUI or other software packages. Attendees will learn to choose the right metabolite models, set up pulse sequences and parameters matching real-world MR acquisition protocols, and apply them in concentration estimation. Advanced participants will gain hands-on experience in modifying pulse sequences, pulse shapes and protocols in the simulator for enhanced flexibility in experimental design. Finally, applications of the simulator in MR study and method development will be demonstrated.

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About Jana

I am a senior scientist working in the field of NMR at the Institute of Scientific Instruments of the Czech Academy of Sciences. During my research fellowship in 1993-1995 and 1998-1999 at the National Research Council Canada I developed software for processing, displaying and analyzing multidimensional MRI and CSI data called MAREVISI. In 2009 I joined the jMRUI development team starting to co-develop spin system simulator NMRScopeB, a plug-in to jMRUI. In 2012 I took over the jMRUI development coordination from the previous jMRUI development coordinator Danielle Graveron-Demilly when she retired.